Package: CITMIC
Type: Package
Title: Estimation of Cell Infiltration Based on Cell Crosstalk
Version: 0.1.1
Maintainer: Junwei Han <hanjunwei1981@163.com>
Authors@R: c(person(given = "Junwei", family = "Han", email = "hanjunwei1981@163.com", role  = c("aut", "cre", "cph")),
             person(given = "Xilong", family = "Zhao", role  = "aut")
             )
Description: A systematic biology tool was developed to identify cell
        infiltration via an Individualized Cell crosstalk network.
        'CITMIC' first constructed a weighted cell crosstalk network by
        integrating Cell-target interaction information, biological
        process data from the Gene Ontology (GO) database, and gene
        transcriptomic data in a specific sample, and then, it used a
        network propagation algorithm on the network to identify cell
        infiltration for the sample. Ultimately, cell infiltration in
        the patient dataset was obtained by normalizing the centrality
        scores of the cells.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
Imports: fastmatch, igraph, parallel, stats
RoxygenNote: 7.2.3
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://hanjunwei-lab.r-universe.dev
Date/Publication: 2024-09-26 06:53:30 UTC
RemoteUrl: https://github.com/hanjunwei-lab/citmic
RemoteRef: HEAD
RemoteSha: fc6ea713d92d876d1cc10c97307736a6c7c628bb
NeedsCompilation: no
Packaged: 2026-06-23 08:07:18 UTC; root
Author: Junwei Han [aut, cre, cph],
  Xilong Zhao [aut]