{ "_id": "6a61b407f673e46fff56e141", "Package": "CITMIC", "Type": "Package", "Title": "Estimation of Cell Infiltration Based on Cell Crosstalk", "Version": "0.1.1", "Maintainer": "Junwei Han ", "Authors@R": "c(person(given = \"Junwei\", family = \"Han\", email = \"hanjunwei1981@163.com\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(given = \"Xilong\", family = \"Zhao\", role = \"aut\")\n)", "Description": "A systematic biology tool was developed to identify cell\ninfiltration via an Individualized Cell crosstalk network.\n'CITMIC' first constructed a weighted cell crosstalk network by\nintegrating Cell-target interaction information, biological\nprocess data from the Gene Ontology (GO) database, and gene\ntranscriptomic data in a specific sample, and then, it used a\nnetwork propagation algorithm on the network to identify cell\ninfiltration for the sample. Ultimately, cell infiltration in\nthe patient dataset was obtained by normalizing the centrality\nscores of the cells.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://hanjunwei-lab.r-universe.dev", "Date/Publication": "2024-09-26 06:53:30 UTC", "RemoteUrl": "https://github.com/hanjunwei-lab/citmic", "RemoteRef": "HEAD", "RemoteSha": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-23 06:23:21 UTC", "User": "root" }, "Author": "Junwei Han [aut, cre, cph],\nXilong Zhao [aut]", "_user": "hanjunwei-lab", "_type": "src", "_file": "CITMIC_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/847e16c1d35e4a1544e2ba2d7c6bf9e97869bcac6aa5e090c8b7eafc3f1e961a", "_filesize": 15299940, "_sha256": "847e16c1d35e4a1544e2ba2d7c6bf9e97869bcac6aa5e090c8b7eafc3f1e961a", "_expires": "2026-10-31T06:26:12.000Z", "_created": "2026-07-23T06:23:21.000Z", "_published": "2026-07-23T06:26:15.175Z", "_jobs": [ { "job": 89134503084, "time": 124, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8554642655" }, { "job": 89134503114, "time": 127, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8554643140" }, { "job": 89134503099, "time": 100, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8554635514" }, { "job": 89134503175, "time": 100, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8554635731" }, { "job": 89133962004, "time": 209, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "8554603968" }, { "job": 89134503102, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8554640488" }, { "job": 89134503119, "time": 75, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8554627667" }, { "job": 89134503097, "time": 66, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8554625249" }, { "job": 89134503129, "time": 71, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8554626198" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459", "_status": "failure", "_upstream": "https://github.com/hanjunwei-lab/citmic", "_commit": { "id": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "author": "zhaopapers <138082329+zhaopapers@users.noreply.github.com>", "committer": "GitHub ", "message": "Rename NAMESPAC to NAMESPACE", "time": 1727333610 }, "_maintainer": { "name": "Junwei Han", "email": "hanjunwei1981@163.com", "login": "hanjunwei-lab", "description": "Junwei Han is a professor in Harbin Medical University. His research is in the areas of bioinformatics and computational systems biology.", "uuid": 60877533 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "fastmatch", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "hanjunwei-lab", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "zhaopapers", "count": 125, "uuid": 138082329 } ], "_userbio": { "uuid": 60877533, "type": "user", "name": "Junwei Han", "followers": 25, "description": "Junwei Han is a professor in Harbin Medical University. His research is in the areas of bioinformatics and computational systems biology." }, "_downloads": { "count": 175, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CITMIC" }, "_devurl": "https://github.com/hanjunwei-lab/citmic", "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/CITMIC.html", "extra/contents.json", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/hanjunwei-lab/citmic", "_realowner": "hanjunwei-lab", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2024-06-14" }, { "version": "0.1.1", "date": "2024-09-17" }, { "version": "0.1.2", "date": "2024-11-08" }, { "version": "0.1.3", "date": "2025-10-15" } ], "_exports": [ "CITMIC", "GetData_CITMIC" ], "_datasets": [ { "name": "CITMIC_Data", "title": "An environment variable that includes some example data", "object": "CITMIC_Data", "class": [ "environment" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "CITMIC", "title": "CITMIC", "topics": [ "CITMIC" ] }, { "page": "CITMIC_Data", "title": "An environment variable that includes some example data", "topics": [ "CITMIC_Data" ] }, { "page": "GetData_CITMIC", "title": "GetData_CITMIC", "topics": [ "GetData_CITMIC" ] } ], "_readme": "https://github.com/hanjunwei-lab/citmic/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "fastmatch", "glue", "igraph", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "rlang", "vctrs" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "citmic", "_universes": [ "hanjunwei-lab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-07-23T06:25:29.000Z", "distro": "resolute", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/f27e9c22076719841d84d035fb58004fdf7781f692a6e3045001348c1f2e56bc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-07-23T06:25:31.000Z", "distro": "resolute", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/b03500a1fe8706054e14aea625aaa3660b036bfc8f9b04407951f8d35af0255f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-07-23T06:25:09.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/1057470d2992757f322425cd431848db0e3d553e026b099de2228b75b2c6772c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-07-23T06:25:10.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/16b9cb7587a2a0e4bbbb4c9bc97fcbee89a9e93e0b467fbf8f039111e42b3f31", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-07-23T06:25:36.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/685ea59f9fa88fae1dd37e1bd972e363f4b0a6f4f47f0481d1d7e4d2f974ea44", "status": "success", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-07-23T06:24:37.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/49303e62d031a191700802c508b7e51ecce58742853d11cc3c934eb2ce6a0eda", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-07-23T06:24:30.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/9c4f806ef77779fa49c9a933b468c43bcec7cada4428f924c0e2495384c8e8f4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" }, { "r": "4.6.1", "os": "win", "version": "0.1.1", "date": "2026-07-23T06:24:32.000Z", "commit": "fc6ea713d92d876d1cc10c97307736a6c7c628bb", "fileid": "https://r2.ropensci.org/4e311e36f66fa68465bbe8617c102d2453230a13671ed6bc6062f1a06dd985b1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/29984700459" } ] }