{ "_id": "6a1058f8acfb0bcc41ca3518", "Package": "ssMutPA", "Type": "Package", "Title": "Single-Sample Mutation-Based Pathway Analysis", "Version": "0.1.1", "Authors@R": "c(person(given = \"Junwei\", family = \"Han\", email = \"hanjunwei1981@163.com\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(given = \"Yalan\", family = \"He\", role = \"aut\"),\nperson(given = \"Qian\", family = \"Wang\", role = \"aut\"))", "Description": "A systematic bioinformatics tool to perform single-sample\nmutation-based pathway analysis by integrating somatic mutation\ndata with the Protein-Protein Interaction (PPI) network. In\nthis method, we use local and global weighted strategies to\nevaluate the effects of network genes from mutations according\nto the network topology and then calculate the mutation-based\npathway enrichment score (ssMutPES) to reflect the accumulated\neffect of mutations of each pathway. Subsequently, the ssMutPES\nprofiles are used for unsupervised spectral clustering to\nidentify cancer subtypes.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libglpk-dev libbz2-dev liblzma-dev libxml2-dev\nxz-utils zlib1g-dev", "Repository": "https://hanjunwei-lab.r-universe.dev", "Date/Publication": "2024-10-16 11:53:57 UTC", "RemoteUrl": "https://github.com/hanjunwei-lab/ssmutpa", "RemoteRef": "HEAD", "RemoteSha": "9aecd48dd6cdce7a24ad07b8a44978f9275d34df", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-09 06:42:17 UTC", "User": "root" }, "Author": "Junwei Han [aut, cre, cph],\nYalan He [aut],\nQian Wang [aut]", "Maintainer": "Junwei Han ", "MD5sum": "083938c9a93af7658e130c5720faa875", "_user": "hanjunwei-lab", "_type": "src", "_file": "ssMutPA_0.1.1.tar.gz", "_fileid": "7dd4c7339d09c1a5ec353f18934c525799612e55281161e96e54619ff8caf222", "_filesize": 2944246, "_sha256": "7dd4c7339d09c1a5ec353f18934c525799612e55281161e96e54619ff8caf222", "_created": "2026-05-09T06:42:17.000Z", "_published": "2026-05-22T13:24:08.674Z", "_distro": "noble", "_jobs": [ { "job": 77388398399, "time": 173, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6893697145" }, { "job": 77388398206, "time": 161, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6893694936" }, { "job": 77388398468, "time": 154, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6893693848" }, { "job": 77388398589, "time": 187, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6893697646" }, { "job": 77388397984, "time": 256, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6893676803" }, { "job": 77388397794, "time": 132, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7161580571" }, { "job": 77388398542, "time": 123, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6893690465" }, { "job": 77388398335, "time": 115, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6893689597" }, { "job": 77388398597, "time": 118, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6893689981" } ], "_buildurl": "https://github.com/r-universe/hanjunwei-lab/actions/runs/25594321914", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/hanjunwei-lab/ssmutpa", "_commit": { "id": "9aecd48dd6cdce7a24ad07b8a44978f9275d34df", "author": "Junwei Han ", "committer": "GitHub ", "message": "Update README.md", "time": 1729079637 }, "_maintainer": { "name": "Junwei Han", "email": "hanjunwei1981@163.com", "login": "hanjunwei-lab", "uuid": 60877533 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggridges", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "kernlab", "role": "Imports" }, { "package": "maftools", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "NbClust", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "pheatmap", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "qpdf", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "hanjunwei-lab", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "nanyuan-he", "count": 12, "uuid": 184461935 }, { "user": "hanjunwei-lab", "count": 3, "uuid": 60877533 } ], "_userbio": { "uuid": 60877533, "type": "user", "name": "Junwei Han", "description": "Junwei Han is a professor in Harbin Medical University. 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