1. CITMIC::CITMIC_Data
    An environment variable that includes some example data
    rda| rds
    environment
  2. DrugSim2DR::myenv
    An environment variable which includes some example data
    rda| rds
    environment
  3. DRviaSPCN::envData
    An environment variable which includes some example data
    rda| rds
    environment
  4. DTSEA::example_disease_list
    An example vector of disease nodes
    json| rda| rds
    character
  5. DTSEA::example_drug_target_list
    An example data frame of drug target lists
    csv| xlsx| json| ndjson| rda| rds
    data.frame|252 x 3
  6. DTSEA::example_ppi
    An example human gene functional interaction network object
    rda| rds
    igraph
  7. DTSEA::random_graph
    A random graph for the computation of the separation measure
    rda| rds
    igraph
  8. IDMIR::MirnaData
    An environment variable that includes some example data
    rda| rds
    environment
  9. iPRISM::data_sig
    data_sig
    csv| json| rda| rds
    matrix|121 x 31
  10. iPRISM::data.cell
    data.cell
    csv| json| rda| rds
    matrix|121 x 21
  11. iPRISM::data.path
    data.path
    csv| json| rda| rds
    matrix|121 x 17
  12. iPRISM::genelist_cp
    TME gene list after random walks
    json| rda| rds
    numeric
  13. iPRISM::genelist_hla
    HLA gene list after random walks
    json| rda| rds
    numeric
  14. iPRISM::genelist_imm
    ICI gene list after random walks
    json| rda| rds
    numeric
  15. iPRISM::path_list
    path_list
    json| rda| rds
    list
  16. iPRISM::ppi
    A protein-protein physical interaction network (PPI network)
    rda| rds
    igraph
  17. iPRISM::pred_value
    Original Class Labels for Samples
    json| rda| rds
    character
  18. iPRISM::Seeds
    Seed Node Names
    json| rda| rds
    character
  19. MiRSEA::envData
    The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
    rda| rds
    environment
  20. SMDIC::envData
    envData
    rda| rds
    environment
  21. SMDIC::xCell.data
    xCell datasets
    rda| rds
    list
  22. ssMutPA::cox_data
    cox_data Univariate cox proportional hazards regression data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 293
  23. ssMutPA::dot_data
    dot_data A data frame.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|350 x 4
  24. ssMutPA::mut_onco
    mut_onco A binary mutation matrix.
    csv| json| rda| rds
    matrix|11968 x 44
  25. ssMutPA::mut_status
    mut_status A binary mutation matrix.
    csv| json| rda| rds
    matrix|12802 x 50
  26. ssMutPA::Path_ES
    Path_ES Single-sample mutation-based pathway enrichment score profiles.
    csv| json| rda| rds
    matrix|215 x 882
  27. ssMutPA::Path_Name
    Path_Name
    json| rda| rds
    character
  28. ssMutPA::RWR_res
    RWR_res Random walk results based on mutated genes in a single sample.
    json| rda| rds
    numeric
  29. ssMutPA::samp_class_onco
    samp_class_onco
    json| rda| rds
    integer
  30. ssMutPA::sample_class
    sample_class The subtype labels of samples.
    json| rda| rds
    integer
  31. ssMutPA::Seeds_Score
    Seeds_Score The local weight of seed nodes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35 x 2
  32. ssMutPA::sur_onco
    sur_onco
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44 x 2
  33. SubtypeDrug::Colork
    Color
    json| rda| rds
    character
  34. SubtypeDrug::Disease_drugs
    Simulated result data
    json| rda| rds
    list
  35. SubtypeDrug::Drugs_CID
    Correspondence table of drug label and drug ID in PubCham database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1194 x 2
  36. SubtypeDrug::Geneexp
    Simulated gene expression data
    csv| json| rda| rds
    matrix|3000 x 40
  37. SubtypeDrug::GeneexpT
    Gene expression data for testing
    csv| json| rda| rds
    matrix|51 x 40
  38. SubtypeDrug::SpwNetworkData
    Subpathway network structure data
    rda| rds
    list
  39. SubtypeDrug::Subtype_drugs
    Simulation result data
    json| rda| rds
    list
  40. SubtypeDrug::UserDS
    Simulated user-defined drug regulator subpathway dataset
    csv| json| rda| rds
    list
  41. SubtypeDrug::UserDST
    User-defined drug regulator subpathway dataset for testing
    csv| json| rda| rds
    list
  42. SubtypeDrug::UserGS
    Simulated user-defined gene set data
    json| rda| rds
    list
  43. SubtypeDrug::UserGST
    User-defined gene set data for testing
    json| rda| rds
    list