Package: CITMIC 0.1.1

CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk

A systematic biology tool was developed to identify cell infiltration via an Individualized Cell crosstalk network. 'CITMIC' first constructed a weighted cell crosstalk network by integrating Cell-target interaction information, biological process data from the Gene Ontology (GO) database, and gene transcriptomic data in a specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Authors:Junwei Han [aut, cre, cph], Xilong Zhao [aut]

CITMIC_0.1.1.tar.gz
CITMIC_0.1.1.zip(r-4.7-any)CITMIC_0.1.1.zip(r-4.6-any)CITMIC_0.1.1.zip(r-4.5-any)
CITMIC_0.1.1.tgz(r-4.6-any)CITMIC_0.1.1.tgz(r-4.5-any)
CITMIC_0.1.1.tar.gz(r-4.7-any)CITMIC_0.1.1.tar.gz(r-4.6-any)
CITMIC_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CITMIC/json (API)

# Install 'CITMIC' in R:
install.packages('CITMIC', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanjunwei-lab/citmic/issues

Datasets:
  • CITMIC_Data - An environment variable that includes some example data

On CRAN:

Conda:

2.70 score 1 stars 5 scripts 271 downloads 2 exports 12 dependencies

Last updated from:fc6ea713d9. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develWARNING139
source / vignettesERROR197
linux-releaseWARNING123
macos-releaseWARNING102
macos-oldrelWARNING90
windows-develWARNING78
windows-releaseWARNING73
windows-oldrelWARNING50
wasm-releaseOK146

Exports:CITMICGetData_CITMIC

Dependencies:clicpp11fastmatchglueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs