Package: CITMIC 0.1.1

CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk

A systematic biology tool was developed to identify cell infiltration via an Individualized Cell crosstalk network. 'CITMIC' first constructed a weighted cell crosstalk network by integrating Cell-target interaction information, biological process data from the Gene Ontology (GO) database, and gene transcriptomic data in a specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Authors:Junwei Han [aut, cre, cph], Xilong Zhao [aut]

CITMIC_0.1.1.tar.gz
CITMIC_0.1.1.zip(r-4.7)CITMIC_0.1.1.zip(r-4.6)CITMIC_0.1.1.zip(r-4.5)
CITMIC_0.1.1.tgz(r-4.6-any)CITMIC_0.1.1.tgz(r-4.5-any)
CITMIC_0.1.1.tar.gz(r-4.7-any)CITMIC_0.1.1.tar.gz(r-4.6-any)
CITMIC_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CITMIC/json (API)

# Install 'CITMIC' in R:

install.packages('CITMIC', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanjunwei-lab/citmic/issues

Datasets:

CITMIC_Data - An environment variable that includes some example data

On CRAN:

2.70 score 1 stars 5 scripts 203 downloads 2 exports 12 dependencies

Last updated from:fc6ea713d9. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	122
source / vignettes	ERROR	186
linux-release-x86_64	WARNING	118
macos-release-arm64	WARNING	93
macos-oldrel-arm64	WARNING	67
windows-devel	WARNING	74
windows-release	WARNING	100
windows-oldrel	WARNING	76
wasm-release	OK	112