Package: CITMIC 0.1.1
CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk
A systematic biology tool was developed to identify cell infiltration via an Individualized Cell crosstalk network. 'CITMIC' first constructed a weighted cell crosstalk network by integrating Cell-target interaction information, biological process data from the Gene Ontology (GO) database, and gene transcriptomic data in a specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.
Authors:
CITMIC_0.1.1.tar.gz
CITMIC_0.1.1.zip(r-4.5)CITMIC_0.1.1.zip(r-4.4)CITMIC_0.1.1.zip(r-4.3)
CITMIC_0.1.1.tgz(r-4.4-any)CITMIC_0.1.1.tgz(r-4.3-any)
CITMIC_0.1.1.tar.gz(r-4.5-noble)CITMIC_0.1.1.tar.gz(r-4.4-noble)
CITMIC_0.1.1.tgz(r-4.4-emscripten)CITMIC_0.1.1.tgz(r-4.3-emscripten)
CITMIC.pdf |CITMIC.html✨
CITMIC/json (API)
# Install 'CITMIC' in R: |
install.packages('CITMIC', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hanjunwei-lab/citmic/issues
- CITMIC_Data - An environment variable that includes some example data
Last updated 2 months agofrom:fc6ea713d9. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 28 2024 |
R-4.5-win | NOTE | Oct 28 2024 |
R-4.5-linux | NOTE | Oct 28 2024 |
R-4.4-win | NOTE | Oct 28 2024 |
R-4.4-mac | NOTE | Oct 28 2024 |
R-4.3-win | NOTE | Oct 28 2024 |
R-4.3-mac | NOTE | Oct 28 2024 |
Exports:CITMICGetData_CITMIC
Dependencies:clicpp11fastmatchglueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
Help page | Topics |
---|---|
CITMIC | CITMIC |
An environment variable that includes some example data | CITMIC_Data |
GetData_CITMIC | GetData_CITMIC |