Package: CITMIC 0.1.1

CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk

A systematic biology tool was developed to identify cell infiltration via an Individualized Cell crosstalk network. 'CITMIC' first constructed a weighted cell crosstalk network by integrating Cell-target interaction information, biological process data from the Gene Ontology (GO) database, and gene transcriptomic data in a specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Authors:Junwei Han [aut, cre, cph], Xilong Zhao [aut]

CITMIC_0.1.1.tar.gz
CITMIC_0.1.1.zip(r-4.7)CITMIC_0.1.1.zip(r-4.6)CITMIC_0.1.1.zip(r-4.5)
CITMIC_0.1.1.tgz(r-4.6-any)CITMIC_0.1.1.tgz(r-4.5-any)
CITMIC_0.1.1.tar.gz(r-4.7-any)CITMIC_0.1.1.tar.gz(r-4.6-any)
CITMIC_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CITMIC/json (API)

# Install 'CITMIC' in R:

install.packages('CITMIC', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanjunwei-lab/citmic/issues

Datasets:

CITMIC_Data - An environment variable that includes some example data

On CRAN:

2.70 score 1 stars 5 scripts 219 downloads 2 exports 12 dependencies

Last updated from:fc6ea713d9. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	171
source / vignettes	ERROR	217
linux-release-x86_64	WARNING	141
macos-release-arm64	WARNING	76
macos-oldrel-arm64	WARNING	67
windows-devel	WARNING	75
windows-release	WARNING	68
windows-oldrel	WARNING	71
wasm-release	OK	113