Package: CITMIC 0.1.1

CITMIC: Estimation of Cell Infiltration Based on Cell Crosstalk

A systematic biology tool was developed to identify cell infiltration via an Individualized Cell crosstalk network. 'CITMIC' first constructed a weighted cell crosstalk network by integrating Cell-target interaction information, biological process data from the Gene Ontology (GO) database, and gene transcriptomic data in a specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.

Authors:Junwei Han [aut, cre, cph], Xilong Zhao [aut]

CITMIC_0.1.1.tar.gz
CITMIC_0.1.1.zip(r-4.5)CITMIC_0.1.1.zip(r-4.4)CITMIC_0.1.1.zip(r-4.3)
CITMIC_0.1.1.tgz(r-4.4-any)CITMIC_0.1.1.tgz(r-4.3-any)
CITMIC_0.1.1.tar.gz(r-4.5-noble)CITMIC_0.1.1.tar.gz(r-4.4-noble)
CITMIC_0.1.1.tgz(r-4.4-emscripten)CITMIC_0.1.1.tgz(r-4.3-emscripten)
CITMIC.pdf |CITMIC.html
CITMIC/json (API)

# Install 'CITMIC' in R:
install.packages('CITMIC', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hanjunwei-lab/citmic/issues

Datasets:
  • CITMIC_Data - An environment variable that includes some example data

On CRAN:

4.48 score 5 scripts 190 downloads 2 exports 12 dependencies

Last updated 2 months agofrom:fc6ea713d9. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 28 2024
R-4.5-winNOTEOct 28 2024
R-4.5-linuxNOTEOct 28 2024
R-4.4-winNOTEOct 28 2024
R-4.4-macNOTEOct 28 2024
R-4.3-winNOTEOct 28 2024
R-4.3-macNOTEOct 28 2024

Exports:CITMICGetData_CITMIC

Dependencies:clicpp11fastmatchglueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs

CITMIC User Guide

Rendered fromCITMIC.Rmdusingknitr::rmarkdownon Oct 28 2024.

Last update: 2024-09-25
Started: 2024-07-29