Package: IDMIR 0.1.0

IDMIR: Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA Interaction Network

A systematic biology tool was developed to identify dysregulated miRNAs via a miRNA-miRNA interaction network. 'IDMIR' first constructed a weighted miRNA interaction network through integrating miRNA-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific-disease context, and then, it used a network propagation algorithm on the network to identify significantly dysregulated miRNAs.

Authors:Junwei Han [aut, cre, cph], Xilong Zhao [aut], Jiashuo Wu [aut]

IDMIR_0.1.0.tar.gz
IDMIR_0.1.0.zip(r-4.5)IDMIR_0.1.0.zip(r-4.4)IDMIR_0.1.0.zip(r-4.3)
IDMIR_0.1.0.tgz(r-4.4-any)IDMIR_0.1.0.tgz(r-4.3-any)
IDMIR_0.1.0.tar.gz(r-4.5-noble)IDMIR_0.1.0.tar.gz(r-4.4-noble)
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IDMIR.pdf |IDMIR.html✨
IDMIR/json (API)

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9 exports 0.09 score 96 dependencies 2 scripts 159 downloads

Last updated 10 months agofrom:8fdfe81288. Checks:OK: 7. Indexed: yes.

Exports:GetData_MirnaGetGDEscoreIdentifyMiRNAMutiMiRNA_CRModelPlotForestPlotHeatmapPlotScatterPlotSurvivalSingleMiRNA_CRModel

Dependencies:abindbackportsbootbroomcarcarDatacheckmateclicolorspacecommonmarkcorrplotcowplotcpp11curldata.tableDerivdoBydplyreggevaluateexactRankTestsfansifarverfastmatchforestplotgenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrigraphisobandjpegkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpheatmappillarpkgconfigpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo