Introduce | Example 1 : Calculate the GDEscore. | Example 2 : Identify candidate miRNAs by random-walk algorithm. | Example 3 : Build a multivariate Cox regression model using the targets of a single miRNA. | Example 4 : Build a multivariate Cox regression model by integrating the models constructed separately based on different miRNA targets. | Visualize 1: Plot the Kaplan-Meier curve. | Visualize 2: Plot the heatmap of miRNA targets expression. | Visualize 3: Plot the forest diagram. | Visualize 4: Plot the Scatter diagram.
Package: IDMIR 0.1.1
IDMIR: Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA Interaction Network
A systematic biology tool was developed to identify dysregulated miRNAs via a miRNA-miRNA interaction network. 'IDMIR' first constructed a weighted miRNA interaction network through integrating miRNA-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific-disease context, and then, it used a network propagation algorithm on the network to identify significantly dysregulated miRNAs.
Authors:
IDMIR_0.1.1.tar.gz
IDMIR_0.1.1.zip(r-4.7)IDMIR_0.1.1.zip(r-4.6)IDMIR_0.1.1.zip(r-4.5)
IDMIR_0.1.1.tgz(r-4.6-any)IDMIR_0.1.1.tgz(r-4.5-any)
IDMIR_0.1.1.tar.gz(r-4.7-any)IDMIR_0.1.1.tar.gz(r-4.6-any)
IDMIR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
IDMIR/json (API)
| # Install 'IDMIR' in R: |
| install.packages('IDMIR', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- MirnaData - An environment variable that includes some example data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8d5dc302df. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 183 | ||
| source / vignettes | OK | 265 | ||
| linux-release-x86_64 | OK | 228 | ||
| macos-release-arm64 | OK | 130 | ||
| macos-oldrel-arm64 | OK | 122 | ||
| windows-devel | OK | 173 | ||
| windows-release | OK | 127 | ||
| windows-oldrel | OK | 140 | ||
| wasm-release | OK | 161 |
Exports:GetData_MirnaGetGDEscoreIdentifyMiRNAMutiMiRNA_CRModelPlotForestPlotHeatmapPlotScatterPlotSurvivalSingleMiRNA_CRModel
Dependencies:abindbackportsbootbroomcarcarDatacheckmateclicolorspacecommonmarkcorrplotcowplotcpp11curlDerivdoBydplyreggexactRankTestsfarverfastmatchforecastforestplotFormulafracdiffgenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtableigraphisobandjpeglabelinglatticelifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmvtnormnlmenloptrnnetnumDerivpbkrtestpheatmappillarpkgconfigpngpolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrstatixS7scalesSparseMstringistringrsurvivalsurvminertibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrxfunxml2zoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GetData_Mirna | GetData_Mirna |
| GetGDEscore | GetGDEscore |
| IdentifyMiRNA | IdentifyMiRNA |
| An environment variable that includes some example data | MirnaData |
| MutiMiRNA_CRModel | MutiMiRNA_CRModel |
| PlotForest | PlotForest |
| PlotHeatmap | PlotHeatmap |
| PlotScatter | PlotScatter |
| PlotSurvival | PlotSurvival |
| SingleMiRNA_CRModel | SingleMiRNA_CRModel |
