Package: IDMIR 0.1.0
IDMIR: Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA Interaction Network
A systematic biology tool was developed to identify dysregulated miRNAs via a miRNA-miRNA interaction network. 'IDMIR' first constructed a weighted miRNA interaction network through integrating miRNA-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific-disease context, and then, it used a network propagation algorithm on the network to identify significantly dysregulated miRNAs.
Authors:
IDMIR_0.1.0.tar.gz
IDMIR_0.1.0.zip(r-4.5)IDMIR_0.1.0.zip(r-4.4)IDMIR_0.1.0.zip(r-4.3)
IDMIR_0.1.0.tgz(r-4.4-any)IDMIR_0.1.0.tgz(r-4.3-any)
IDMIR_0.1.0.tar.gz(r-4.5-noble)IDMIR_0.1.0.tar.gz(r-4.4-noble)
IDMIR_0.1.0.tgz(r-4.4-emscripten)IDMIR_0.1.0.tgz(r-4.3-emscripten)
IDMIR.pdf |IDMIR.html✨
IDMIR/json (API)
| # Install 'IDMIR' in R: |
| install.packages('IDMIR', repos = c('https://hanjunwei-lab.r-universe.dev', 'https://cloud.r-project.org')) |
- MirnaData - An environment variable that includes some example data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:8fdfe81288. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 04 2024 |
| R-4.5-win | OK | Nov 04 2024 |
| R-4.5-linux | OK | Nov 04 2024 |
| R-4.4-win | OK | Nov 04 2024 |
| R-4.4-mac | OK | Nov 04 2024 |
| R-4.3-win | OK | Nov 04 2024 |
| R-4.3-mac | OK | Nov 04 2024 |
Exports:GetData_MirnaGetGDEscoreIdentifyMiRNAMutiMiRNA_CRModelPlotForestPlotHeatmapPlotScatterPlotSurvivalSingleMiRNA_CRModel
Dependencies:abindbackportsbootbroomcarcarDatacheckmateclicolorspacecommonmarkcorrplotcowplotcpp11curldata.tableDerivdoBydplyreggevaluateexactRankTestsfansifarverfastmatchforestplotFormulagenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrigraphisobandjpegkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpheatmappillarpkgconfigpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GetData_Mirna | GetData_Mirna |
| GetGDEscore | GetGDEscore |
| IdentifyMiRNA | IdentifyMiRNA |
| An environment variable that includes some example data | MirnaData |
| MutiMiRNA_CRModel | MutiMiRNA_CRModel |
| PlotForest | PlotForest |
| PlotHeatmap | PlotHeatmap |
| PlotScatter | PlotScatter |
| PlotSurvival | PlotSurvival |
| SingleMiRNA_CRModel | SingleMiRNA_CRModel |
